Research Activities早稲田大学 研究活動

Integrative single-cell RNA-seq analysys of vascularized cerebral organoids(Published in BMC Biology, November 2023)

Journal Title
/掲載ジャーナル名
BMC Biology
Publication Year and Month
/掲載年月
November, 2023
Paper Title
/論文タイトル
Integrative single-cell RNA-seq analysys of vascularized cerebral organoids
DOI
/論文DOI
10.1186/s12915-023-01711-1
 Author of Waseda University
/本学の著者
KATAOKA, Kosuke(Researcher(Assistant Professor), Research Council (Research Organization), Comprehensive Research Organization):Responsible Author, Last Author
Related Websites
/関連Web
Abstract
/抄録

Background

Cerebral organoids are three-dimensional in vitro cultured brains that mimic the function and structure of the human brain. One of the major challenges for cerebral organoids is the lack of functional vasculature. Without perfusable vessels, oxygen and nutrient supplies may be insufficient for long-term culture, hindering the investigation of the neurovascular interactions. Recently, several strategies for the vascularization of human cerebral organoids have been reported. However, the generalizable trends and variability among different strategies are unclear due to the lack of a comprehensive characterization and comparison of these vascularization strategies. In this study, we aimed to explore the effect of different vascularization strategies on the nervous system and vasculature in human cerebral organoids.

Results

We integrated single-cell RNA sequencing data of multiple vascularized and vascular organoids and fetal brains from publicly available datasets and assessed the protocol-dependent and culture-day-dependent effects on the cell composition and transcriptomic profiles in neuronal and vascular cells. We revealed the similarities and uniqueness of multiple vascularization strategies and demonstrated the transcriptomic effects of vascular induction on neuronal and mesodermal-like cell populations. Moreover, our data suggested that the interaction between neurons and mesodermal-like cell populations is important for the cerebrovascular-specific profile of endothelial-like cells.

Conclusions

This study highlights the current challenges to vascularization strategies in human cerebral organoids and offers a benchmark for the future fabrication of vascularized organoids.

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